PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872909.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 196aa    MW: 22012.7 Da    PI: 10.3349
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.43.3e-2570113144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  XP_015872909.1  70 DPEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 113
                     79****************************************98 PP

2QLQ61.72.1e-21841235
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35
                    +FT+aQ+ +L++Q+++yKy++a++PvPp+Ll++i
  XP_015872909.1  8 PFTNAQWKELERQAMIYKYMVASVPVPPDLLLPI 41
                    8********************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.0E-12743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.9E-15841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.126843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.58670114IPR014977WRC domain
PfamPF088793.9E-2171113IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAATLGFPFT NAQWKELERQ AMIYKYMVAS VPVPPDLLLP INTRNLSAPA ASQYSLGSDF  60
SLRLSNNNTD PEPGRCKRTD GKKWRCSRDV APDQKYCERH MHRGRPRSRK HVEVHVNNNN  120
KRTRHDHHHH HALPTTSSAT MAVTNPTVNN NINGSHTQFI GPTSALPYHQ SPVFLDKSTI  180
KASTFDSSLS SEKVST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015873100.11e-147PREDICTED: growth-regulating factor 4-like
SwissprotQ6ZIK51e-41GRF4_ORYSJ; Growth-regulating factor 4
TrEMBLM5XKV06e-80M5XKV0_PRUPE; Uncharacterized protein
STRINGVIT_16s0098g01080.t017e-67(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73242842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.13e-40growth-regulating factor 7